Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | DN590_18150 | Not Available | Positive | 3672680 - 3673615 | 34838.4 |
| aspartate/glutamate racemase | DN590_18155 | Not Available | Negative | 3673587 - 3674294 | 25608.7 |
| cupin domain-containing protein | DN590_18160 | Not Available | Positive | 3674436 - 3674762 | 12192.7 |
| sugar porter family mfs transporter | DN590_18165 | Not Available | Negative | 3674869 - 3676287 | 51701.6 |
| hypothetical protein | DN590_18170 | Not Available | Negative | 3676496 - 3677486 | 36381.3 |
| hypothetical protein | DN590_18175 | Not Available | Negative | 3677486 - 3677680 | 7233.79 |
| phage capsid protein | DN590_18180 | Not Available | Negative | 3677812 - 3678843 | 37918.9 |
| hypothetical protein | DN590_18185 | Not Available | Negative | 3678861 - 3679217 | 12374.5 |
| hypothetical protein | DN590_18190 | Not Available | Negative | 3679214 - 3679429 | 8284.01 |
| hypothetical protein | DN590_18195 | Not Available | Negative | 3680110 - 3680433 | 11974.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

