Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcda | DN590_18000 | Not Available | Negative | 3637092 - 3637898 | 28543.6 |
| murein transglycosylase a | DN590_18005 | Not Available | Negative | 3638007 - 3639104 | 40136.5 |
| Trna-met | Not Available | Not Available | Positive | 3639310 - 3639386 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3639539 - 3639615 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3639649 - 3639725 | Not Available |
| n-acetylmuramoyl-l-alanine amidase | DN590_18025 | Not Available | Negative | 3639800 - 3641053 | 45513.0 |
| amino-acid n-acetyltransferase | DN590_18030 | Not Available | Positive | 3641288 - 3642619 | 49429.5 |
| exodeoxyribonuclease v subunit alpha | DN590_18035 | Not Available | Negative | 3642717 - 3644546 | 66255.4 |
| exodeoxyribonuclease v subunit beta | DN590_18040 | Not Available | Negative | 3644543 - 3648088 | 133236.0 |
| pitrilysin | DN590_18045 | Not Available | Negative | 3648081 - 3650969 | 107485.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

