Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fucose isomerase | DN590_17950 | Not Available | Positive | 3627608 - 3629383 | 65037.4 |
| l-fuculokinase | DN590_17955 | Not Available | Positive | 3629491 - 3630909 | 51987.1 |
| l-fucose mutarotase | DN590_17960 | Not Available | Positive | 3630911 - 3631333 | 15398.9 |
| l-fucose operon activator | DN590_17965 | Not Available | Positive | 3631391 - 3632119 | 27190.5 |
| 23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmm | DN590_17970 | Not Available | Negative | 3632155 - 3633255 | 41903.6 |
| duf423 domain-containing protein | DN590_17975 | Not Available | Negative | 3633248 - 3633643 | 14440.1 |
| transcriptional regulator gcva | DN590_17980 | Not Available | Negative | 3633662 - 3634579 | 34366.4 |
| ygdi/ygdr family lipoprotein | DN590_17985 | Not Available | Negative | 3634943 - 3635170 | 8144.64 |
| cysteine desulfurase csda | DN590_17990 | Not Available | Positive | 3635363 - 3636568 | 43044.4 |
| cysteine desulfurase sulfur acceptor subunit csde | DN590_17995 | Not Available | Positive | 3636568 - 3637014 | 16071.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

