Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| secy-interacting protein | DN590_17895 | Not Available | Negative | 3616681 - 3617226 | 20406.2 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DN590_17900 | Not Available | Positive | 3617295 - 3618143 | 32512.1 |
| log family protein | DN590_17905 | Not Available | Positive | 3618257 - 3619621 | 50846.9 |
| haaap family serine/threonine permease | DN590_17910 | Not Available | Positive | 3620183 - 3621472 | 46878.2 |
| l-serine ammonia-lyase | DN590_17915 | Not Available | Positive | 3621526 - 3622893 | 48807.9 |
| flap endonuclease xni | DN590_17925 | Not Available | Positive | 3623063 - 3623818 | 28198.8 |
| lactaldehyde reductase | DN590_17930 | Not Available | Negative | 3623895 - 3625043 | 40520.7 |
| l-fuculose-phosphate aldolase | DN590_17935 | Not Available | Negative | 3625055 - 3625702 | 23802.7 |
| hypothetical protein | DN590_17940 | Not Available | Positive | 3625681 - 3625884 | 7561.39 |
| l-fucose:h+ symporter permease | DN590_17945 | Not Available | Positive | 3626266 - 3627576 | 47475.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

