Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp diphosphokinase | DN590_17840 | Not Available | Negative | 3602079 - 3604313 | 84052.8 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DN590_17845 | Not Available | Negative | 3604414 - 3605712 | 48172.1 |
| two-component sensor histidine kinase bara | DN590_17850 | Not Available | Positive | 3605770 - 3608526 | 102439.0 |
| glycerate kinase | DN590_17855 | Not Available | Negative | 3608843 - 3609985 | 39537.4 |
| glucarate dehydratase | DN590_17860 | Not Available | Negative | 3610068 - 3611408 | 49114.9 |
| glucarate dehydratase | DN590_17865 | Not Available | Negative | 3611429 - 3612769 | 48644.9 |
| mfs transporter | DN590_17870 | Not Available | Negative | 3612772 - 3614124 | 48990.7 |
| flavodoxin | DN590_17880 | Not Available | Negative | 3614468 - 3614917 | 16287.0 |
| trna pseudouridine(65) synthase truc | DN590_17885 | Not Available | Negative | 3614937 - 3615719 | 29740.6 |
| hypothetical protein | DN590_17890 | Not Available | Negative | 3615719 - 3616048 | 12711.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

