Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-manno-octulosonate-8-phosphatase kdsc | DN590_17685 | Not Available | Positive | 3567393 - 3567959 | 19880.1 |
| lps export abc transporter periplasmic protein lptc | DN590_17690 | Not Available | Positive | 3567956 - 3568531 | 21713.8 |
| lipopolysaccharide abc transporter substrate-binding protein lpta | DN590_17695 | Not Available | Positive | 3568500 - 3569048 | 19756.6 |
| abc transporter atp-binding protein | DN590_17700 | Not Available | Positive | 3569055 - 3569780 | 26812.3 |
| rna polymerase sigma-54 factor | DN590_17705 | Not Available | Positive | 3569827 - 3571260 | 53905.8 |
| ribosome hibernation promoting factor | DN590_17710 | Not Available | Positive | 3571283 - 3571570 | 10806.0 |
| pts iia-like nitrogen regulatory protein ptsn | DN590_17715 | Not Available | Positive | 3571654 - 3572145 | 17809.4 |
| rnase adapter rapz | DN590_17720 | Not Available | Positive | 3572191 - 3573045 | 32538.2 |
| pts phosphocarrier protein npr | DN590_17725 | Not Available | Positive | 3573042 - 3573314 | 9794.76 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DN590_17730 | Not Available | Negative | 3573381 - 3574100 | 26896.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

