Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan permease | DN590_17480 | Not Available | Negative | 3527845 - 3529089 | 44543.4 |
| dead/deah family atp-dependent rna helicase | DN590_17485 | Not Available | Negative | 3529236 - 3531215 | 74090.7 |
| lipoprotein nlpi | DN590_17490 | Not Available | Negative | 3531344 - 3532228 | 33553.5 |
| polyribonucleotide nucleotidyltransferase | DN590_17495 | Not Available | Negative | 3532338 - 3534470 | 76933.4 |
| 30s ribosomal protein s15 | DN590_17500 | Not Available | Negative | 3534717 - 3534986 | 10198.3 |
| trna pseudouridine(55) synthase trub | DN590_17505 | Not Available | Negative | 3535260 - 3536204 | 35220.3 |
| 30s ribosome-binding factor rbfa | DN590_17510 | Not Available | Negative | 3536204 - 3536608 | 15181.4 |
| translation initiation factor if-2 | DN590_17515 | Not Available | Negative | 3536758 - 3539448 | 97660.0 |
| transcription termination/antitermination protein nusa | DN590_17520 | Not Available | Negative | 3539473 - 3540960 | 54966.1 |
| ribosome maturation factor rimp | DN590_17525 | Not Available | Negative | 3540989 - 3541453 | 17054.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

