Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dnaa initiator-associating protein diaa | DN590_17430 | Not Available | Positive | 3520744 - 3521334 | 21073.3 |
| osmotically-inducible protein osmy | DN590_17435 | Not Available | Positive | 3521344 - 3521919 | 20047.1 |
| hypothetical protein | DN590_17440 | Not Available | Negative | 3522006 - 3522641 | 23144.1 |
| hypothetical protein | DN590_17445 | Not Available | Negative | 3522678 - 3523106 | 16457.9 |
| giy-yig nuclease family protein | DN590_17450 | Not Available | Positive | 3523159 - 3523449 | 10858.0 |
| n-acetyltransferase | DN590_17455 | Not Available | Negative | 3523446 - 3523949 | 18493.7 |
| scp2 domain-containing protein | DN590_17460 | Not Available | Negative | 3523943 - 3524467 | 19738.0 |
| u32 family peptidase | DN590_17465 | Not Available | Positive | 3524688 - 3525683 | 37012.1 |
| u32 family peptidase | DN590_17470 | Not Available | Positive | 3525674 - 3526570 | 33144.8 |
| luciferase-like monooxygenase | DN590_17475 | Not Available | Positive | 3526749 - 3527756 | 36964.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

