Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-rhamnose mutarotase | DN590_17115 | Not Available | Positive | 3463109 - 3463423 | 12318.6 |
| xre family transcriptional regulator | DN590_17120 | Not Available | Negative | 3463507 - 3464055 | 19800.9 |
| branched-chain amino acid abc transporter permease | DN590_17125 | Not Available | Positive | 3464157 - 3464816 | 22702.5 |
| azld domain-containing protein | DN590_17130 | Not Available | Positive | 3464816 - 3465139 | 11307.4 |
| duf1471 domain-containing protein | DN590_17135 | Not Available | Negative | 3465182 - 3465394 | 7297.71 |
| crp/fnr family transcriptional regulator | DN590_17140 | Not Available | Positive | 3465524 - 3466045 | 20162.1 |
| ygjv family protein | DN590_17145 | Not Available | Positive | 3466104 - 3466610 | 18645.4 |
| formate dehydrogenase accessory sulfurtransferase fdhd | DN590_17150 | Not Available | Negative | 3466577 - 3467413 | 30268.4 |
| sulfate abc transporter substrate-binding protein | DN590_17160 | Not Available | Positive | 3467608 - 3468195 | 21311.4 |
| formate dehydrogenase-n subunit alpha | DN590_17165 | Not Available | Positive | 3468244 - 3470658 | 89282.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

