Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein activator lpob | DN590_13375 | Not Available | Positive | 2688530 - 2689171 | 22671.2 |
| thiamine kinase | DN590_13380 | Not Available | Positive | 2689152 - 2689976 | 32226.6 |
| beta-n-acetylhexosaminidase | DN590_13385 | Not Available | Positive | 2689987 - 2691012 | 37529.7 |
| hypothetical protein | DN590_13390 | Not Available | Positive | 2691034 - 2691576 | 21192.3 |
| nad(p)/fad-dependent oxidoreductase | DN590_13395 | Not Available | Positive | 2691813 - 2693117 | 47256.5 |
| glycine zipper 2tm domain-containing protein | DN590_13400 | Not Available | Positive | 2693286 - 2693825 | 18807.5 |
| tonb-dependent siderophore receptor | DN590_13405 | Not Available | Negative | 2693883 - 2696063 | 80725.5 |
| tetr/acrr family transcriptional regulator | DN590_13410 | Not Available | Negative | 2696318 - 2696953 | 23606.2 |
| duf1471 domain-containing protein | DN590_13415 | Not Available | Positive | 2697197 - 2697454 | 8774.46 |
| lysm peptidoglycan-binding domain-containing protein | DN590_13420 | Not Available | Negative | 2697541 - 2698506 | 34622.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

