Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_13275 | Not Available | Negative | 2672322 - 2672600 | 10324.9 |
| type ii toxin-antitoxin system rele/pare family toxin | DN590_13280 | Not Available | Positive | 2672821 - 2673150 | 12493.4 |
| xre family transcriptional regulator | DN590_13285 | Not Available | Positive | 2673131 - 2673412 | 10972.2 |
| is5/is1182 family transposase | DN590_13290 | Not Available | Positive | 2673690 - 2673826 | 5590.74 |
| 1,2-phenylacetyl-coa epoxidase subunit a | DN590_13295 | Not Available | Positive | 2674006 - 2674935 | 35170.7 |
| 1,2-phenylacetyl-coa epoxidase subunit b | DN590_13300 | Not Available | Positive | 2674946 - 2675233 | 10950.8 |
| phenylacetate-coa oxygenase subunit paai | DN590_13305 | Not Available | Positive | 2675241 - 2675996 | 28093.4 |
| phenylacetate-coa oxygenase subunit paaj | DN590_13310 | Not Available | Positive | 2676009 - 2676506 | 18419.1 |
| phenylacetate-coa oxygenase/reductase subunit paak | DN590_13315 | Not Available | Positive | 2676514 - 2677584 | 38837.3 |
| 2,3-dehydroadipyl-coa hydratase | DN590_13320 | Not Available | Positive | 2677581 - 2678348 | 27308.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

