Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type-f conjugative transfer system pilin assembly thiol-disulfide isomerase trbb | DN590_13105 | Not Available | Positive | 2637822 - 2638376 | 20101.3 |
| conjugal transfer protein trbf | DN590_13110 | Not Available | Positive | 2638369 - 2638797 | 15723.4 |
| conjugal transfer protein trah | DN590_13115 | Not Available | Positive | 2638784 - 2640154 | 50331.4 |
| conjugal transfer protein trag | DN590_13120 | Not Available | Positive | 2640154 - 2642976 | 101713.0 |
| entry exclusion protein | DN590_13125 | Not Available | Positive | 2642998 - 2643429 | 16560.3 |
| sel1 repeat family protein | DN590_13130 | Not Available | Positive | 2643504 - 2644178 | 24730.4 |
| type iv conjugative transfer system coupling protein trad | DN590_13135 | Not Available | Positive | 2644312 - 2646504 | 81863.9 |
| conjugative transfer relaxase/helicase trai | DN590_13140 | Not Available | Positive | 2646504 - 2651744 | 189304.0 |
| type-f conjugative transfer system pilin acetylase trax | DN590_13145 | Not Available | Positive | 2651746 - 2652483 | 26828.9 |
| conjugal transfer protein | DN590_13150 | Not Available | Positive | 2652550 - 2653269 | 26746.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

