Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tray domain-containing protein | DN590_13005 | Not Available | Positive | 2623653 - 2623877 | 8623.44 |
| type iv conjugative transfer system pilin traa | DN590_13010 | Not Available | Positive | 2623935 - 2624285 | 12062.1 |
| type iv conjugative transfer system protein tral | DN590_13015 | Not Available | Positive | 2624436 - 2624741 | 11822.5 |
| type iv conjugative transfer system protein trae | DN590_13020 | Not Available | Positive | 2624756 - 2625322 | 21131.4 |
| type-f conjugative transfer system secretin trak | DN590_13025 | Not Available | Positive | 2625309 - 2626052 | 25874.8 |
| conjugal transfer protein trab | DN590_13030 | Not Available | Positive | 2626039 - 2627433 | 48913.7 |
| type iv conjugative transfer system protein trav | DN590_13035 | Not Available | Positive | 2627455 - 2627994 | 19074.8 |
| conjugal transfer protein trar | DN590_13040 | Not Available | Positive | 2628114 - 2628338 | 8724.57 |
| hypothetical protein | DN590_13045 | Not Available | Positive | 2628342 - 2628527 | 7013.36 |
| hypothetical protein | DN590_13050 | Not Available | Positive | 2628511 - 2628912 | 14324.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

