Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1778 domain-containing protein | DN590_12760 | Not Available | Positive | 2585023 - 2585292 | 10270.3 |
| gnat family n-acetyltransferase | DN590_12765 | Not Available | Positive | 2585296 - 2585826 | 20350.4 |
| is5 family transposase | DN590_12775 | Not Available | Positive | 2585958 - 2586851 | 34598.9 |
| transposase | DN590_12785 | Not Available | Positive | 2587790 - 2587996 | 7358.55 |
| is30-like element is30 family transposase | DN590_12790 | Not Available | Positive | 2587953 - 2589104 | 44249.5 |
| is66 family insertion sequence hypothetical protein | DN590_12795 | Not Available | Positive | 2589213 - 2589596 | 14384.7 |
| is66 family insertion sequence hypothetical protein | DN590_12800 | Not Available | Positive | 2589593 - 2589940 | 12759.9 |
| is66 family transposase | DN590_12805 | Not Available | Positive | 2589990 - 2591525 | 57790.1 |
| is110 family transposase | DN590_12810 | Not Available | Negative | 2591582 - 2592940 | 50819.9 |
| plasmid-partitioning protein sopa | DN590_12820 | Not Available | Positive | 2593766 - 2594932 | 43579.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

