Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_12700 | Not Available | Positive | 2574374 - 2574559 | 6845.99 |
| rna polymerase subunit sigma-70 | DN590_12705 | Not Available | Positive | 2574710 - 2575219 | 19498.6 |
| thioredoxin family protein | DN590_12715 | Not Available | Positive | 2576391 - 2576621 | 8266.28 |
| hypothetical protein | DN590_12720 | Not Available | Negative | 2576899 - 2577102 | 7800.74 |
| universal stress protein | DN590_12725 | Not Available | Negative | 2577184 - 2578011 | 30048.8 |
| sulp family inorganic anion transporter | DN590_12730 | Not Available | Negative | 2578029 - 2579507 | 53001.1 |
| is110 family transposase | DN590_12735 | Not Available | Positive | 2580014 - 2581036 | 37853.8 |
| serine/threonine protein kinase | DN590_12745 | Not Available | Positive | 2581794 - 2581937 | 5669.19 |
| site-specific integrase | DN590_12750 | Not Available | Positive | 2582112 - 2582852 | 27969.2 |
| repb family plasmid replication initiator protein | DN590_12755 | Not Available | Negative | 2583178 - 2584155 | 36935.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

