Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system rele/pare family toxin | DN590_12070 | Not Available | Positive | 2458555 - 2458872 | 12011.8 |
| putative addiction module antidote protein | DN590_12075 | Not Available | Positive | 2458865 - 2459143 | 9873.01 |
| dipeptidase pepe | DN590_12080 | Not Available | Positive | 2459254 - 2459943 | 24580.7 |
| na/pi cotransporter family protein | DN590_12085 | Not Available | Negative | 2460080 - 2461711 | 59629.7 |
| methionine synthase | DN590_12090 | Not Available | Negative | 2461932 - 2465615 | 136013.0 |
| acetate operon transcriptional repressor iclr | DN590_12095 | Not Available | Positive | 2465811 - 2466635 | 29593.7 |
| bifunctional isocitrate dehydrogenase kinase/phosphatase | DN590_12100 | Not Available | Negative | 2466722 - 2468503 | 69148.1 |
| isocitrate lyase | DN590_12105 | Not Available | Negative | 2468606 - 2469910 | 47643.2 |
| malate synthase a | DN590_12110 | Not Available | Negative | 2469942 - 2471543 | 60396.2 |
| homoserine o-succinyltransferase | DN590_12115 | Not Available | Negative | 2471812 - 2472741 | 35756.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

