Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar-binding transcriptional regulator | DN590_12020 | Not Available | Positive | 2450708 - 2451661 | 35241.1 |
| sdr family nad(p)-dependent oxidoreductase | DN590_12025 | Not Available | Positive | 2451731 - 2452537 | 28988.5 |
| pts sorbose transporter subunit iia | DN590_12030 | Not Available | Positive | 2452547 - 2452954 | 14621.6 |
| pts fructose transporter subunit iib | DN590_12035 | Not Available | Positive | 2452954 - 2453448 | 18411.3 |
| pts mannose/fructose/sorbose transporter subunit iic | DN590_12040 | Not Available | Positive | 2453514 - 2454311 | 27949.0 |
| pts mannose transporter subunit iid | DN590_12045 | Not Available | Positive | 2454323 - 2455147 | 29435.8 |
| l-sorbose 1-phosphate reductase | DN590_12050 | Not Available | Positive | 2455216 - 2456439 | 44885.3 |
| shikimate 5-dehydrogenase | DN590_12055 | Not Available | Positive | 2456441 - 2457253 | 28898.8 |
| hypothetical protein | DN590_12060 | Not Available | Negative | 2457303 - 2457608 | 11069.2 |
| atpase | DN590_12065 | Not Available | Positive | 2457740 - 2458291 | 21023.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

