Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotidyltransferase | DN590_11970 | Not Available | Negative | 2439824 - 2440609 | 30476.5 |
| slipin family protein | DN590_11975 | Not Available | Negative | 2440615 - 2441742 | 42034.1 |
| sigma 54-dependent transcriptional regulator | DN590_11980 | Not Available | Positive | 2442193 - 2443773 | 59479.1 |
| ketopantoate/pantoate/pantothenate transporter pans | DN590_11985 | Not Available | Positive | 2443884 - 2444822 | 33038.7 |
| pts sugar transporter | DN590_11990 | Not Available | Positive | 2445177 - 2446652 | 50977.5 |
| histidine biosynthesis protein | DN590_11995 | Not Available | Positive | 2446680 - 2447519 | 29543.6 |
| had family phosphatase | DN590_12000 | Not Available | Positive | 2447538 - 2448401 | 31714.1 |
| deor/glpr transcriptional regulator | DN590_12005 | Not Available | Positive | 2448388 - 2449146 | 27959.9 |
| duf3811 domain-containing protein | DN590_12010 | Not Available | Positive | 2449220 - 2449492 | 10484.7 |
| 23s rrna pseudouridine(2604) synthase rluf | DN590_12015 | Not Available | Negative | 2449489 - 2450364 | 32596.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

