Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aromatic amino acid transaminase | DN590_11815 | Not Available | Negative | 2406547 - 2407740 | 43429.9 |
| alanine racemase | DN590_11820 | Not Available | Negative | 2407869 - 2408948 | 39083.1 |
| replicative dna helicase dnab | DN590_11825 | Not Available | Negative | 2409163 - 2410578 | 52532.4 |
| quinone oxidoreductase | DN590_11830 | Not Available | Positive | 2410643 - 2411626 | 34928.9 |
| envelope stress response protein pspg | DN590_11835 | Not Available | Negative | 2411806 - 2412048 | 8952.82 |
| trna dihydrouridine(20/20a) synthase dusa | DN590_11840 | Not Available | Negative | 2412182 - 2413180 | 36961.4 |
| cupin | DN590_11845 | Not Available | Negative | 2413288 - 2413776 | 18488.6 |
| transcriptional regulator zur | DN590_11850 | Not Available | Positive | 2413892 - 2414410 | 19357.4 |
| csbd family protein | DN590_11855 | Not Available | Negative | 2414459 - 2414668 | 8296.62 |
| mate family efflux transporter dinf | DN590_11860 | Not Available | Negative | 2414805 - 2416124 | 47835.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

