Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| redox-sensitive transcriptional activator soxr | DN590_11765 | Not Available | Negative | 2397533 - 2397991 | 16837.4 |
| dna-binding transcriptional regulator soxs | DN590_11770 | Not Available | Positive | 2398078 - 2398401 | 12961.6 |
| eal domain-containing protein | DN590_11775 | Not Available | Negative | 2398404 - 2399990 | 60425.1 |
| hypothetical protein | DN590_11780 | Not Available | Positive | 2400543 - 2400824 | 10244.9 |
| single-stranded dna-binding protein ssb1 | DN590_11785 | Not Available | Negative | 2400891 - 2401415 | 18622.8 |
| excinuclease abc subunit uvra | DN590_11790 | Not Available | Positive | 2401667 - 2404489 | 103760.0 |
| hypothetical protein | DN590_11795 | Not Available | Negative | 2404473 - 2404856 | 12356.4 |
| hypothetical protein | DN590_11800 | Not Available | Negative | 2404799 - 2405014 | 6709.18 |
| mmcq/yjbr family dna-binding protein | DN590_11805 | Not Available | Negative | 2405165 - 2405521 | 13501.0 |
| class b acid phosphatase | DN590_11810 | Not Available | Negative | 2405649 - 2406362 | 26362.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

