Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ammonia-forming cytochrome c nitrite reductase subunit c552 | DN590_11710 | Not Available | Negative | 2384819 - 2386255 | 53703.7 |
| acetate--coa ligase | DN590_11715 | Not Available | Positive | 2386690 - 2388648 | 72053.3 |
| duf485 domain-containing protein | DN590_11720 | Not Available | Positive | 2388891 - 2389205 | 11689.5 |
| cation/acetate symporter actp | DN590_11725 | Not Available | Positive | 2389202 - 2390851 | 59133.5 |
| lrgb family protein | DN590_11730 | Not Available | Negative | 2390897 - 2391586 | 24775.2 |
| cida/lrga family protein | DN590_11735 | Not Available | Negative | 2391579 - 2391989 | 15415.8 |
| lysr family transcriptional regulator | DN590_11740 | Not Available | Positive | 2392091 - 2392981 | 33382.9 |
| transposase | DN590_11745 | Not Available | Negative | 2393057 - 2393548 | 19712.2 |
| na+/h+ antiporter | DN590_11750 | Not Available | Negative | 2393771 - 2395417 | 60383.3 |
| ncs2 family permease | DN590_11755 | Not Available | Negative | 2395575 - 2396924 | 45727.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

