Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-asparaginase 2 | DN590_11610 | Not Available | Positive | 2366425 - 2367471 | 36834.9 |
| radical sam family heme chaperone hemw | DN590_11615 | Not Available | Negative | 2367586 - 2368722 | 42639.5 |
| xtp/ditp diphosphatase | DN590_11620 | Not Available | Negative | 2368715 - 2369308 | 20948.8 |
| yggu family protein | DN590_11625 | Not Available | Negative | 2369316 - 2369606 | 10414.7 |
| yggt family protein | DN590_11630 | Not Available | Negative | 2369603 - 2370169 | 21110.4 |
| yggs family pyridoxal phosphate-dependent enzyme | DN590_11635 | Not Available | Negative | 2370188 - 2370892 | 25532.6 |
| hypothetical protein | DN590_11640 | Not Available | Positive | 2370910 - 2371098 | 6894.42 |
| d-lyxose/d-mannose family sugar isomerase | DN590_11645 | Not Available | Positive | 2371418 - 2372101 | 25799.3 |
| ketose 1,6-bisphosphate aldolase | DN590_11650 | Not Available | Positive | 2372116 - 2372976 | 31325.5 |
| carbohydrate kinase family protein | DN590_11655 | Not Available | Positive | 2372973 - 2373977 | 36722.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

