Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-phe | Not Available | Not Available | Positive | 2356728 - 2356803 | Not Available |
| duf554 domain-containing protein | DN590_11565 | Not Available | Negative | 2356909 - 2357616 | 24465.1 |
| ornithine decarboxylase | DN590_11570 | Not Available | Positive | 2358085 - 2360220 | 79273.5 |
| nucleoside permease | DN590_11575 | Not Available | Negative | 2360273 - 2361529 | 46296.6 |
| membrane-bound lytic murein transglycosylase mltc | DN590_11580 | Not Available | Negative | 2361740 - 2362822 | 40031.6 |
| oxidative damage protection protein | DN590_11585 | Not Available | Negative | 2362912 - 2363181 | 10682.8 |
| adenine dna glycosylase | DN590_11590 | Not Available | Negative | 2363209 - 2364261 | 39337.3 |
| trna (guanosine(46)-n7)-methyltransferase trmb | DN590_11595 | Not Available | Positive | 2364422 - 2365141 | 27276.7 |
| duf469 domain-containing protein | DN590_11600 | Not Available | Positive | 2365141 - 2365467 | 12798.1 |
| duf2884 family protein | DN590_11605 | Not Available | Positive | 2365517 - 2366236 | 26288.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

