Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system contractile sheath large subunit | DN590_11405 | Not Available | Positive | 2318890 - 2320419 | 57590.2 |
| type vi secretion system baseplate subunit tssk | DN590_11410 | Not Available | Positive | 2320443 - 2321780 | 49251.0 |
| dotu family type iv/vi secretion system protein | DN590_11415 | Not Available | Positive | 2321786 - 2322427 | 24291.0 |
| hypothetical protein | DN590_11420 | Not Available | Positive | 2322431 - 2324095 | 61555.4 |
| type vi secretion system tube protein hcp | DN590_11425 | Not Available | Positive | 2324112 - 2324603 | 18756.1 |
| type vi secretion system atpase tssh | DN590_11430 | Not Available | Positive | 2324766 - 2327390 | 96995.2 |
| hypothetical protein | DN590_11440 | Not Available | Positive | 2328125 - 2328322 | 7906.7 |
| hypothetical protein | DN590_11445 | Not Available | Positive | 2328604 - 2329296 | 26461.4 |
| hypothetical protein | DN590_11450 | Not Available | Positive | 2329303 - 2329704 | 15870.0 |
| type vi secretion system tip protein vgrg | DN590_11455 | Not Available | Positive | 2329759 - 2332284 | 92623.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

