Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ni/fe-hydrogenase cytochrome b subunit | DN590_11355 | Not Available | Positive | 2307909 - 2309087 | 43649.7 |
| hydrogenase 2 large subunit | DN590_11360 | Not Available | Positive | 2309084 - 2310787 | 62403.6 |
| hyad/hybd family hydrogenase maturation endopeptidase | DN590_11365 | Not Available | Positive | 2310787 - 2311281 | 17695.8 |
| hydrogenase-2 assembly chaperone | DN590_11370 | Not Available | Positive | 2311274 - 2311762 | 18138.9 |
| hydrogenase maturation nickel metallochaperone hypa | DN590_11375 | Not Available | Positive | 2311755 - 2312096 | 12530.9 |
| hypc/hybg/hupf family hydrogenase formation chaperone | DN590_11380 | Not Available | Positive | 2312127 - 2312375 | 8841.7 |
| glutathione-dependent disulfide-bond oxidoreductase | DN590_11385 | Not Available | Negative | 2312470 - 2313336 | 32354.2 |
| cbbbc protein | DN590_11390 | Not Available | Positive | 2313555 - 2315843 | 83701.4 |
| bifunctional glutathionylspermidine amidase/synthase | DN590_11395 | Not Available | Positive | 2315997 - 2317859 | 70655.9 |
| type vi secretion system contractile sheath small subunit | DN590_11400 | Not Available | Positive | 2318327 - 2318824 | 18894.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

