Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb system transport protein exbd | DN590_11305 | Not Available | Positive | 2299319 - 2299744 | 15614.0 |
| cytoplasmic protein | DN590_11310 | Not Available | Negative | 2299822 - 2300229 | 15530.6 |
| hypothetical protein | DN590_11315 | Not Available | Negative | 2300231 - 2300635 | 15164.8 |
| rna helicase | DN590_11320 | Not Available | Positive | 2300740 - 2301243 | 19485.3 |
| l-glyceraldehyde 3-phosphate reductase | DN590_11325 | Not Available | Negative | 2301312 - 2302352 | 38854.4 |
| dienelactone hydrolase family protein | DN590_11330 | Not Available | Positive | 2302508 - 2303395 | 32572.8 |
| hamp domain-containing protein | DN590_11335 | Not Available | Positive | 2303611 - 2305251 | 58671.0 |
| duf2623 domain-containing protein | DN590_11340 | Not Available | Positive | 2305336 - 2305623 | 10763.8 |
| hydrogenase 2 small subunit | DN590_11345 | Not Available | Positive | 2305812 - 2306930 | 39647.4 |
| hydrogenase 2 operon protein hyba | DN590_11350 | Not Available | Positive | 2306933 - 2307919 | 35908.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

