Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ygiq family radical sam protein | DN590_11255 | Not Available | Positive | 2288550 - 2290721 | 82044.7 |
| hit family protein | DN590_11260 | Not Available | Negative | 2290825 - 2291280 | 17117.4 |
| anion permease | DN590_11265 | Not Available | Negative | 2291325 - 2292779 | 52025.6 |
| 2,5-didehydrogluconate reductase dkga | DN590_11270 | Not Available | Negative | 2292968 - 2293795 | 31219.5 |
| alcohol dehydrogenase | DN590_11275 | Not Available | Negative | 2294021 - 2295184 | 41991.1 |
| arac family transcriptional regulator | DN590_11280 | Not Available | Positive | 2295361 - 2296278 | 34572.3 |
| deda family protein | DN590_11285 | Not Available | Negative | 2296349 - 2297008 | 24244.4 |
| cystathionine beta-lyase | DN590_11290 | Not Available | Negative | 2297140 - 2298327 | 42935.4 |
| hypothetical protein | DN590_11295 | Not Available | Positive | 2298427 - 2298537 | 4426.5 |
| biopolymer transporter exbb | DN590_11300 | Not Available | Positive | 2298578 - 2299312 | 26192.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

