Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc transporter zupt | DN590_11155 | Not Available | Negative | 2268488 - 2269261 | 26365.3 |
| 4,5-dopa dioxygenase extradiol | DN590_11160 | Not Available | Positive | 2269409 - 2270197 | 28849.4 |
| hypothetical protein | DN590_11165 | Not Available | Negative | 2270283 - 2271443 | 44966.3 |
| duf1190 family protein | DN590_11170 | Not Available | Negative | 2271449 - 2272126 | 23489.7 |
| hypothetical protein | DN590_11175 | Not Available | Negative | 2272014 - 2272274 | 10261.5 |
| outer membrane channel protein tolc | DN590_11180 | Not Available | Negative | 2272274 - 2273758 | 53748.5 |
| adp-ribose diphosphatase | DN590_11185 | Not Available | Positive | 2273964 - 2274596 | 23853.3 |
| duf1249 family protein | DN590_11190 | Not Available | Positive | 2274593 - 2275015 | 16485.7 |
| 3',5'-cyclic-amp phosphodiesterase | DN590_11195 | Not Available | Positive | 2275040 - 2275867 | 30969.6 |
| esterase yqia | DN590_11200 | Not Available | Positive | 2275867 - 2276448 | 21707.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

