Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_11005 | Not Available | Negative | 2238693 - 2239799 | 40504.4 |
| bifunctional 23s rrna (guanine(2069)-n(7))-methyltransferase rlmk/23s rrna (guanine(2445)-n(2))-methyltransferase rlml | DN590_11010 | Not Available | Positive | 2239898 - 2242006 | 79003.3 |
| abc transporter atp-binding protein | DN590_11015 | Not Available | Positive | 2242019 - 2243926 | 72376.3 |
| membrane integrity-associated transporter subunit pqia | DN590_11020 | Not Available | Positive | 2243942 - 2245195 | 46616.4 |
| paraquat-inducible protein b | DN590_11025 | Not Available | Positive | 2245200 - 2246840 | 60526.6 |
| membrane integrity-associated transporter subunit pqic | DN590_11030 | Not Available | Positive | 2246837 - 2247400 | 20704.8 |
| ribosome modulation factor | DN590_11035 | Not Available | Positive | 2247657 - 2247824 | 6542.93 |
| beta-hydroxydecanoyl-acp dehydratase | DN590_11040 | Not Available | Negative | 2247932 - 2248450 | 18984.2 |
| lon protease family protein | DN590_11045 | Not Available | Negative | 2248519 - 2250279 | 66049.7 |
| macrodomain ter protein matp | DN590_11050 | Not Available | Positive | 2250465 - 2250917 | 17807.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

