Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metalloprotease | DN590_10605 | Not Available | Positive | 2167274 - 2168035 | 26951.9 |
| (d)cmp kinase | DN590_10615 | Not Available | Positive | 2168207 - 2168890 | 24883.9 |
| 30s ribosomal protein s1 | DN590_10620 | Not Available | Positive | 2169004 - 2170677 | 61159.5 |
| integration host factor subunit beta | DN590_10625 | Not Available | Positive | 2170837 - 2171121 | 10617.8 |
| comec family protein | DN590_10630 | Not Available | Positive | 2171328 - 2173592 | 84925.6 |
| lipid a abc transporter atp-binding protein/permease msba | DN590_10635 | Not Available | Positive | 2173629 - 2175377 | 64448.7 |
| tetraacyldisaccharide 4'-kinase | DN590_10640 | Not Available | Positive | 2175374 - 2176351 | 35207.8 |
| protein ycar | DN590_10650 | Not Available | Positive | 2177676 - 2177858 | 6839.35 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | DN590_10655 | Not Available | Positive | 2177855 - 2178601 | 27572.1 |
| hypothetical protein | DN590_10660 | Not Available | Positive | 2178766 - 2179659 | 34473.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

