Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nark family nitrate/nitrite mfs transporter | DN590_10555 | Not Available | Negative | 2156170 - 2157555 | 49585.7 |
| tetr family transcriptional regulator | DN590_10560 | Not Available | Negative | 2157768 - 2158346 | 21500.9 |
| methyl viologen resistance protein smva | DN590_10565 | Not Available | Positive | 2158464 - 2159948 | 51780.2 |
| gfa family protein | DN590_10570 | Not Available | Negative | 2159952 - 2160332 | 14472.2 |
| porin ompd | DN590_10575 | Not Available | Negative | 2160476 - 2161525 | 38288.7 |
| is630 family transposase | DN590_10580 | Not Available | Negative | 2161550 - 2161652 | 3821.72 |
| 30s ribosomal protein s12 methylthiotransferase accessory protein ycao | DN590_10585 | Not Available | Negative | 2161890 - 2163650 | 65481.9 |
| duf421 domain-containing protein | DN590_10590 | Not Available | Positive | 2163787 - 2164479 | 26031.3 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | DN590_10595 | Not Available | Positive | 2164692 - 2165780 | 39668.4 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | DN590_10600 | Not Available | Positive | 2165850 - 2167133 | 45916.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

