Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssrab-activated protein | DN590_10405 | Not Available | Negative | 2123237 - 2124544 | 47178.9 |
| abc transporter substrate-binding protein | DN590_10410 | Not Available | Positive | 2124827 - 2126425 | 59417.3 |
| duf2526 family protein | DN590_10415 | Not Available | Positive | 2126443 - 2126676 | 8851.42 |
| eama-like transporter family protein | DN590_10420 | Not Available | Negative | 2126741 - 2127190 | 15697.8 |
| l-methionine sulfoximine/l-methionine sulfone acetyltransferase | DN590_10425 | Not Available | Negative | 2127187 - 2127705 | 19441.0 |
| xre family transcriptional regulator | DN590_10430 | Not Available | Positive | 2127743 - 2128318 | 21451.8 |
| nadp-dependent oxidoreductase | DN590_10435 | Not Available | Positive | 2128377 - 2129411 | 37564.1 |
| ynce family protein | DN590_10440 | Not Available | Positive | 2129664 - 2130725 | 38431.9 |
| ygdi/ygdr family lipoprotein | DN590_10445 | Not Available | Positive | 2130863 - 2131084 | 7897.45 |
| l-asparagine permease | DN590_10450 | Not Available | Negative | 2131126 - 2132568 | 52125.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

