Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyamine abc transporter atp-binding protein | DN590_10355 | Not Available | Positive | 2111083 - 2112099 | 37139.9 |
| abc transporter permease | DN590_10360 | Not Available | Positive | 2112100 - 2113044 | 34539.2 |
| abc transporter permease | DN590_10365 | Not Available | Positive | 2113034 - 2113840 | 29042.0 |
| aminobutyraldehyde dehydrogenase | DN590_10370 | Not Available | Positive | 2113862 - 2115289 | 51004.0 |
| mfs transporter | DN590_10375 | Not Available | Negative | 2115483 - 2116610 | 40408.8 |
| arac family transcriptional regulator | DN590_10380 | Not Available | Positive | 2116712 - 2117491 | 29514.7 |
| stress response membrane protein yncl | DN590_10385 | Not Available | Negative | 2117611 - 2117706 | 3360.2 |
| duf2566 domain-containing protein | DN590_10390 | Not Available | Positive | 2117899 - 2118072 | 6608.51 |
| virulence effector srfc | DN590_10395 | Not Available | Negative | 2118092 - 2120254 | 81232.5 |
| virulence factor srfb | DN590_10400 | Not Available | Negative | 2120251 - 2123232 | 110988.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

