Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fmn-dependent nadh-azoreductase | DN590_10140 | Not Available | Negative | 2066142 - 2066747 | 21662.9 |
| atp-dependent rna helicase hrpa | DN590_10145 | Not Available | Positive | 2066949 - 2070851 | 148933.0 |
| ydcf family protein | DN590_10150 | Not Available | Positive | 2070937 - 2071728 | 29121.4 |
| aldehyde dehydrogenase | DN590_10155 | Not Available | Positive | 2071928 - 2073367 | 52261.8 |
| alpha/beta hydrolase | DN590_10160 | Not Available | Negative | 2073409 - 2074335 | 33956.5 |
| type i glyceraldehyde-3-phosphate dehydrogenase | DN590_10165 | Not Available | Negative | 2074462 - 2075463 | 35976.2 |
| cytochrome b561 | DN590_10170 | Not Available | Positive | 2075653 - 2076183 | 20123.8 |
| dmt family transporter | DN590_10175 | Not Available | Negative | 2076222 - 2077148 | 33558.2 |
| translesion error-prone dna polymerase v autoproteolytic subunit | DN590_10180 | Not Available | Positive | 2077409 - 2077828 | 15057.3 |
| translesion error-prone dna polymerase v subunit umuc | DN590_10185 | Not Available | Positive | 2077831 - 2079099 | 47593.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

