Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ydbh family protein | DN590_10090 | Not Available | Positive | 2056951 - 2059590 | 97078.5 |
| ynbe family lipoprotein | DN590_10095 | Not Available | Positive | 2059587 - 2059778 | 6959.72 |
| duf1318 domain-containing protein | DN590_10100 | Not Available | Positive | 2059786 - 2060112 | 11814.2 |
| cdp-alcohol phosphatidyltransferase family protein | DN590_10105 | Not Available | Positive | 2060220 - 2060825 | 22204.0 |
| phosphatidate cytidylyltransferase | DN590_10110 | Not Available | Positive | 2060822 - 2061739 | 34167.2 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | DN590_10115 | Not Available | Positive | 2061743 - 2062384 | 24413.4 |
| hypothetical protein | DN590_10120 | Not Available | Positive | 2062377 - 2064137 | 65417.1 |
| hypothetical protein | DN590_10125 | Not Available | Positive | 2064151 - 2065431 | 48527.4 |
| hypothetical protein | DN590_10130 | Not Available | Positive | 2065407 - 2065808 | 15290.0 |
| hypothetical protein | DN590_10135 | Not Available | Positive | 2065907 - 2066098 | 7954.68 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

