Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldolase | DN590_09985 | Not Available | Negative | 2033704 - 2034348 | 23222.8 |
| hypothetical protein | DN590_09990 | Not Available | Negative | 2034345 - 2035601 | 44439.0 |
| helix-turn-helix domain-containing protein | DN590_09995 | Not Available | Positive | 2035974 - 2036867 | 34285.0 |
| uroporphyrinogen-iii c-methyltransferase | DN590_10000 | Not Available | Negative | 2036846 - 2037634 | 28323.6 |
| lysr family transcriptional regulator | DN590_10005 | Not Available | Positive | 2038040 - 2038942 | 34426.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DN590_10010 | Not Available | Negative | 2039024 - 2039626 | 22251.4 |
| fumarate hydratase | DN590_10015 | Not Available | Negative | 2039636 - 2041288 | 59882.3 |
| glutaminase | DN590_10020 | Not Available | Negative | 2041398 - 2042399 | 35902.9 |
| dicarboxylate/amino acid:cation symporter | DN590_10025 | Not Available | Negative | 2042496 - 2043800 | 45884.8 |
| duf4387 family protein | DN590_10030 | Not Available | Negative | 2043970 - 2044287 | 11855.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

