Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxoglutarate dehydrogenase e1 component | DN590_09935 | Not Available | Positive | 2022585 - 2025386 | 104762.0 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | DN590_09940 | Not Available | Positive | 2025401 - 2026624 | 44254.2 |
| adp-forming succinate--coa ligase subunit beta | DN590_09945 | Not Available | Positive | 2026715 - 2027881 | 41388.0 |
| succinate--coa ligase subunit alpha | DN590_09950 | Not Available | Positive | 2027881 - 2028750 | 29807.3 |
| asp/glu racemase | DN590_09955 | Not Available | Negative | 2028847 - 2029500 | 23621.1 |
| heme-binding protein | DN590_09960 | Not Available | Negative | 2029497 - 2029916 | 14961.1 |
| bile acid:sodium symporter family protein | DN590_09965 | Not Available | Negative | 2029922 - 2031268 | 47776.0 |
| 3-keto-5-aminohexanoate cleavage protein | DN590_09970 | Not Available | Negative | 2031290 - 2032102 | 29712.9 |
| hydroxypyruvate isomerase | DN590_09975 | Not Available | Negative | 2032131 - 2032907 | 29297.2 |
| deor/glpr transcriptional regulator | DN590_09980 | Not Available | Negative | 2032888 - 2033694 | 29837.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

