Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf979 domain-containing protein | DN590_09885 | Not Available | Positive | 2013422 - 2014417 | 35712.7 |
| pyroglutamyl-peptidase i | DN590_09890 | Not Available | Positive | 2014427 - 2015071 | 22283.0 |
| endonuclease viii | DN590_09895 | Not Available | Positive | 2015086 - 2015877 | 30001.2 |
| abrb family transcriptional regulator | DN590_09900 | Not Available | Negative | 2015874 - 2016920 | 37045.2 |
| citrate synthase | DN590_09905 | Not Available | Negative | 2017096 - 2018379 | 48110.9 |
| hypothetical protein | DN590_09910 | Not Available | Negative | 2018817 - 2019020 | 7674.37 |
| succinate dehydrogenase cytochrome b556 subunit | DN590_09915 | Not Available | Positive | 2019092 - 2019481 | 14253.1 |
| succinate dehydrogenase membrane anchor subunit | DN590_09920 | Not Available | Positive | 2019475 - 2019822 | 12812.1 |
| succinate dehydrogenase flavoprotein subunit | DN590_09925 | Not Available | Positive | 2019822 - 2021588 | 64324.5 |
| succinate dehydrogenase iron-sulfur subunit | DN590_09930 | Not Available | Positive | 2021604 - 2022320 | 26734.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

