Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts n-acetyl glucosamine transporter subunit iiabc | DN590_09730 | Not Available | Positive | 1980953 - 1982902 | 68074.7 |
| glutamine--trna ligase | DN590_09735 | Not Available | Positive | 1983090 - 1984757 | 63539.2 |
| chitoporin | DN590_09745 | Not Available | Positive | 1985194 - 1986600 | 52758.8 |
| hypothetical protein | DN590_09750 | Not Available | Positive | 1986650 - 1986982 | 12092.4 |
| citrate-proton symporter | DN590_09755 | Not Available | Negative | 1987034 - 1988329 | 47182.6 |
| tricarballylate utilization 4fe-4s protein tcub | DN590_09760 | Not Available | Negative | 1988383 - 1989522 | 41813.8 |
| fad-dependent tricarballylate dehydrogenase tcua | DN590_09765 | Not Available | Negative | 1989509 - 1990912 | 51193.9 |
| tricarballylate utilization lysr family transcriptional regulator tcur | DN590_09770 | Not Available | Negative | 1991010 - 1991936 | 33327.7 |
| transcriptional repressor | DN590_09775 | Not Available | Negative | 1992065 - 1992511 | 16767.8 |
| ryhb-regulated fur leader peptide | DN590_09780 | Not Available | Negative | 1992504 - 1992590 | 3022.66 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

