Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinate-nucleotide adenylyltransferase | DN590_09580 | Not Available | Negative | 1956222 - 1956863 | 24369.2 |
| dna polymerase iii subunit delta | DN590_09585 | Not Available | Negative | 1956865 - 1957896 | 38541.7 |
| lps assembly lipoprotein lpte | DN590_09590 | Not Available | Negative | 1957896 - 1958495 | 21457.8 |
| leucine--trna ligase | DN590_09595 | Not Available | Negative | 1958510 - 1961092 | 97124.8 |
| zinc ribbon-containing protein | DN590_09600 | Not Available | Positive | 1961328 - 1961810 | 18727.1 |
| pyrimidine-specific ribonucleoside hydrolase riha | DN590_09605 | Not Available | Negative | 1961917 - 1962852 | 33976.0 |
| amino acid abc transporter atp-binding protein | DN590_09610 | Not Available | Negative | 1962969 - 1963694 | 26720.8 |
| glutamate/aspartate abc transporter permease gltk | DN590_09615 | Not Available | Negative | 1963694 - 1964368 | 24861.2 |
| amino acid abc transporter permease | DN590_09620 | Not Available | Negative | 1964368 - 1965108 | 27415.1 |
| glutamate/aspartate abc transporter substrate-binding protein | DN590_09625 | Not Available | Negative | 1965268 - 1966176 | 33425.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

