Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | DN590_09480 | Not Available | Negative | 1937409 - 1938182 | 29434.3 |
| sensor histidine kinase dpib | DN590_09485 | Not Available | Positive | 1938602 - 1940263 | 61564.6 |
| two-component response regulator | DN590_09490 | Not Available | Positive | 1940232 - 1940912 | 25268.6 |
| anaerobic c4-dicarboxylate transporter dcuc | DN590_09495 | Not Available | Negative | 1941029 - 1942414 | 48276.2 |
| lipid iv(a) palmitoyltransferase pagp | DN590_09500 | Not Available | Positive | 1942877 - 1943440 | 21969.8 |
| cold-shock protein | DN590_09505 | Not Available | Positive | 1943600 - 1943839 | 8632.43 |
| fluoride efflux transporter crcb | DN590_09510 | Not Available | Negative | 1943892 - 1944275 | 13761.2 |
| deaminated glutathione amidase | DN590_09515 | Not Available | Positive | 1944366 - 1945154 | 28084.2 |
| twin-arginine translocase subunit tate | DN590_09520 | Not Available | Positive | 1945283 - 1945486 | 7071.68 |
| lipoyl synthase | DN590_09525 | Not Available | Negative | 1945584 - 1946549 | 35923.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

