Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family transcriptional regulator | DN590_09380 | Not Available | Positive | 1919528 - 1920475 | 34518.6 |
| hypothetical protein | DN590_09385 | Not Available | Negative | 1920513 - 1920806 | 10980.2 |
| gnat family n-acetyltransferase | DN590_09390 | Not Available | Positive | 1920936 - 1921352 | 15891.0 |
| transcriptional regulator dagr | DN590_09395 | Not Available | Positive | 1921443 - 1924241 | 104827.0 |
| hypothetical protein | DN590_09400 | Not Available | Negative | 1924238 - 1924453 | 8069.75 |
| pts fructose transporter subunit iia | DN590_09405 | Not Available | Positive | 1924455 - 1924880 | 15141.4 |
| pts system mannose/fructose/n-acetylgalactosamine-transporter subunit iib | DN590_09410 | Not Available | Positive | 1924893 - 1925378 | 17645.3 |
| pts sugar transporter subunit iic | DN590_09415 | Not Available | Positive | 1925404 - 1926153 | 26773.9 |
| pts system mannose/fructose/sorbose family transporter subunit iid | DN590_09420 | Not Available | Positive | 1926153 - 1927010 | 30735.3 |
| d-glucosaminate-6-phosphate ammonia lyase | DN590_09425 | Not Available | Positive | 1927014 - 1928123 | 39560.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

