Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hexose-6-phosphate:phosphate antiporter | DN590_09330 | Not Available | Positive | 1909351 - 1910742 | 50786.7 |
| lysr family transcriptional regulator | DN590_09335 | Not Available | Negative | 1910790 - 1911695 | 33581.7 |
| duf1198 family protein | DN590_09340 | Not Available | Positive | 1911801 - 1912253 | 17464.4 |
| srpbcc domain-containing protein | DN590_09345 | Not Available | Positive | 1912353 - 1912877 | 19303.7 |
| purine ribonucleoside efflux pump nepi | DN590_09350 | Not Available | Positive | 1913019 - 1914212 | 41737.4 |
| carbohydrate porin | DN590_09355 | Not Available | Negative | 1914274 - 1915653 | 50606.7 |
| pts lactose/cellobiose transporter subunit iia | DN590_09360 | Not Available | Negative | 1915859 - 1916161 | 11251.6 |
| 6-phospho-beta-glucosidase | DN590_09365 | Not Available | Negative | 1916174 - 1917556 | 53346.6 |
| pts cellobiose transporter subunit iic | DN590_09370 | Not Available | Negative | 1917577 - 1918908 | 48203.1 |
| pts sugar transporter subunit iib | DN590_09375 | Not Available | Negative | 1918921 - 1919235 | 11597.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

