Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DN590_09125 | Not Available | Negative | 1866928 - 1868292 | 49081.6 |
| membrane protein insertase yidc | DN590_09130 | Not Available | Negative | 1868398 - 1870044 | 61577.3 |
| membrane protein insertion efficiency factor yidd | DN590_09135 | Not Available | Negative | 1870047 - 1870304 | 9371.57 |
| ribonuclease p protein component | DN590_09140 | Not Available | Negative | 1870268 - 1870627 | 13785.1 |
| 50s ribosomal protein l34 | DN590_09145 | Not Available | Negative | 1870645 - 1870785 | 5409.74 |
| chromosomal replication initiator protein dnaa | DN590_09155 | Not Available | Positive | 1871392 - 1872795 | 52733.1 |
| dna polymerase iii subunit beta | DN590_09160 | Not Available | Positive | 1872800 - 1873900 | 40557.0 |
| dna replication/repair protein recf | DN590_09165 | Not Available | Positive | 1873900 - 1874973 | 40488.3 |
| dna topoisomerase (atp-hydrolyzing) subunit b | DN590_09170 | Not Available | Positive | 1875002 - 1877416 | 89846.9 |
| cof-type had-iib family hydrolase | DN590_09175 | Not Available | Positive | 1877626 - 1878438 | 29621.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

