Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2754 family protein | DN590_08825 | Not Available | Negative | 1799447 - 1799665 | 8282.12 |
| duf2755 family protein | DN590_08830 | Not Available | Positive | 1799930 - 1800253 | 11875.7 |
| duf1615 domain-containing protein | DN590_08835 | Not Available | Negative | 1800238 - 1801341 | 40457.7 |
| peptide antibiotic transporter sbma | DN590_08840 | Not Available | Negative | 1801357 - 1802577 | 46428.8 |
| d-alanyl-d-alanine- carboxypeptidase/endopeptidase amph | DN590_08845 | Not Available | Positive | 1802962 - 1804119 | 41670.2 |
| hydrogen peroxide resistance inhibitor ipra | DN590_08850 | Not Available | Negative | 1804121 - 1804744 | 23661.7 |
| autotransporter outer membrane beta-barrel domain-containing protein | DN590_08855 | Not Available | Negative | 1804834 - 1807758 | 104183.0 |
| porphobilinogen synthase | DN590_08860 | Not Available | Positive | 1808259 - 1809233 | 35587.9 |
| taurine dioxygenase | DN590_08865 | Not Available | Negative | 1809311 - 1810162 | 32416.3 |
| taurine abc transporter permease tauc | DN590_08870 | Not Available | Negative | 1810159 - 1810989 | 29704.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

