Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_08775 | Not Available | Negative | 1790755 - 1790946 | 7134.34 |
| shikimate kinase arol | DN590_08780 | Not Available | Negative | 1790973 - 1791518 | 19717.7 |
| yaii/yqxd family protein | DN590_08785 | Not Available | Negative | 1791705 - 1792160 | 16966.5 |
| pyrroline-5-carboxylate reductase | DN590_08790 | Not Available | Positive | 1792368 - 1793177 | 28297.7 |
| diguanylate cyclase adra | DN590_08795 | Not Available | Negative | 1793195 - 1794310 | 41531.0 |
| phosphate starvation-inducible protein psif | DN590_08800 | Not Available | Negative | 1794402 - 1794722 | 11836.5 |
| alkaline phosphatase | DN590_08805 | Not Available | Negative | 1794820 - 1796235 | 49368.1 |
| anti-rssb factor | DN590_08810 | Not Available | Negative | 1796340 - 1796582 | 9048.11 |
| mfs transporter | DN590_08815 | Not Available | Negative | 1796831 - 1798027 | 42963.1 |
| d-alanine--d-alanine ligase | DN590_08820 | Not Available | Positive | 1798329 - 1799423 | 39285.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

