Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | DN590_08675 | Not Available | Negative | 1767421 - 1768485 | 39223.8 |
| acp phosphodiesterase | DN590_08680 | Not Available | Positive | 1768576 - 1769157 | 23189.5 |
| peroxiredoxin | DN590_08685 | Not Available | Positive | 1769326 - 1769928 | 22264.5 |
| amidohydrolase | DN590_08690 | Not Available | Negative | 1769996 - 1771864 | 69084.5 |
| antibiotic biosynthesis monooxygenase | DN590_08695 | Not Available | Negative | 1771886 - 1772431 | 20750.6 |
| hydrolase | DN590_08700 | Not Available | Negative | 1772605 - 1773246 | 23792.4 |
| lysr family transcriptional regulator | DN590_08705 | Not Available | Positive | 1773520 - 1774422 | 33548.4 |
| maltodextrin glucosidase | DN590_08710 | Not Available | Negative | 1774416 - 1776233 | 68804.9 |
| proline-specific permease proy | DN590_08715 | Not Available | Negative | 1776372 - 1777745 | 50198.8 |
| branched-chain amino acid transporter carrier protein brnq | DN590_08720 | Not Available | Negative | 1777827 - 1779146 | 46265.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

