Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator nrdr | DN590_08625 | Not Available | Negative | 1759272 - 1759721 | 17212.9 |
| hypothetical protein | DN590_08630 | Not Available | Positive | 1759875 - 1760414 | 19541.4 |
| nucleoside-specific channel-forming protein tsx | DN590_08635 | Not Available | Positive | 1760713 - 1761576 | 32708.6 |
| yafy family transcriptional regulator | DN590_08640 | Not Available | Negative | 1761622 - 1762314 | 26570.9 |
| voc family protein | DN590_08645 | Not Available | Negative | 1762338 - 1762703 | 12998.5 |
| protein translocase subunit secf | DN590_08650 | Not Available | Negative | 1762873 - 1763844 | 35299.5 |
| protein translocase subunit secd | DN590_08655 | Not Available | Negative | 1763855 - 1765702 | 66577.0 |
| preprotein translocase subunit yajc | DN590_08660 | Not Available | Negative | 1765730 - 1766062 | 11845.8 |
| trna guanosine(34) transglycosylase tgt | DN590_08665 | Not Available | Negative | 1766085 - 1767212 | 42540.0 |
| dna metabolism protein | DN590_08670 | Not Available | Negative | 1767288 - 1767395 | 3461.32 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

