Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome o ubiquinol oxidase subunit iv | DN590_08525 | Not Available | Positive | 1742307 - 1742636 | 11993.2 |
| protoheme ix farnesyltransferase | DN590_08530 | Not Available | Positive | 1742648 - 1743538 | 32489.7 |
| hypothetical protein | DN590_08535 | Not Available | Negative | 1743602 - 1743961 | 14290.7 |
| hypothetical protein | DN590_08540 | Not Available | Negative | 1743961 - 1744410 | 16685.2 |
| type vi secretion system tube protein hcp | DN590_08545 | Not Available | Negative | 1744422 - 1744904 | 18125.4 |
| mfs transporter | DN590_08550 | Not Available | Positive | 1745087 - 1746451 | 48837.4 |
| yajq family cyclic di-gmp-binding protein | DN590_08555 | Not Available | Negative | 1746498 - 1746989 | 18369.9 |
| 2-dehydropantoate 2-reductase | DN590_08560 | Not Available | Positive | 1747164 - 1748075 | 33804.6 |
| protein deglycase yajl | DN590_08565 | Not Available | Positive | 1748038 - 1748628 | 20845.2 |
| hypothetical protein | DN590_08570 | Not Available | Positive | 1748661 - 1749743 | 40182.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

