Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plp-dependent aminotransferase family protein | DN590_08365 | Not Available | Positive | 1710307 - 1711734 | 52126.8 |
| hypothetical protein | DN590_08370 | Not Available | Negative | 1711794 - 1712012 | 8077.62 |
| hypothetical protein | DN590_08375 | Not Available | Negative | 1712009 - 1712260 | 9309.3 |
| methylated-dna--[protein]-cysteine s-methyltransferase | DN590_08385 | Not Available | Positive | 1712718 - 1713029 | 11437.8 |
| hypothetical protein | DN590_08390 | Not Available | Negative | 1713061 - 1713630 | 19433.3 |
| acyl-coa thioesterase ii | DN590_08395 | Not Available | Positive | 1713843 - 1714703 | 32228.5 |
| ammonium transporter amtb | DN590_08400 | Not Available | Negative | 1714754 - 1716040 | 44468.1 |
| p-ii family nitrogen regulator | DN590_08405 | Not Available | Negative | 1716072 - 1716410 | 12173.8 |
| hypothetical protein | DN590_08410 | Not Available | Positive | 1716437 - 1716697 | 9744.09 |
| multidrug abc transporter permease/atp-binding protein | DN590_08415 | Not Available | Negative | 1716659 - 1718437 | 64970.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

